I just compiled my knowledge about nanofactories into this block diagram.
Any thoughts? ( You can open and edit the attached *.graphml file with the closed java freeware program yEd - here: http://www.yworks.com/en/products/yfiles/yed/ )

Nanofactory block diagram
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Related to this quite some time ago I extracted this flow-chart out of the minimal toolset paper:
http://www.molecularassembler.com/Papers/MinToolset.pdf
In the diagram above this chart corresponds to the points:- moiety preparation
- moiety routing
- tooltip cycle
This is only the most minimal toolset. You can begin to see the complexity here.
The red ones are rate limiting gas pase steps which still need better solutions.
Note that I had to decide for a lot of tradeoffs in this visualisation.
It is thus far from perfect and definitely improvable.
(License: Public Domain) -
Jim Logajan
Seems something broke with the forums database.
The *.png image file is no longer loadable here.Seems the *.graphml became inacessible too.
Hmm … I can reupload the image screencap but not the *.graphml.
yEd-tooltip-cycle-graph_v1.00.graphmlThe file extension is invalid.
*.svg is blocked too. -
Jim Logajan
Seems something broke with the forums database.
The *.png image file is no longer loadable here.Seems the *.graphml became inacessible too.
Hmm … I can reupload the image screencap but not the *.graphml.
yEd-tooltip-cycle-graph_v1.00.graphmlThe file extension is invalid.
*.svg is blocked too.Sorry about that. The directory where images generated by those file types got moved somehow. The directory has been moved back to where it belongs so the images should now display. I have not tested whether graphml or svg files can again be uploaded.
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